heliX+ DNA Enzyme Activity Kit User Manual

Product: DNA ENZYME ACTIVITY KIT with red dye Ra

Model: HK-EA-1 v1.1

Manufacturer: Dynamic Biosensors GmbH & Inc.

Key Features

  • ssDNA template (48 + 32 bp) for functionalization of heliX® Adapter Chip on Spot 1.
  • dsDNA template (48 + 32 bp) for functionalization of heliX® Adapter Chip on Spot 2.
  • Compatible with heliX® Adapter Chip.
  • Includes Adapter strands for 100 regenerations.
  • This DNA template carries a moderately hydrophilic red dye (Ra) with a single positive net charge.

heliX® Adapter Chip Overview

The heliX® Adapter Chip features two distinct spots, each with a different anchor sequence designed for DNA-encoded addressing. Spot 1 is functionalized with an ssDNA template (Adapter strand 1 - nf), while Spot 2 is functionalized with a dsDNA template (cTemplate Adapter strand 2 - nf). These anchor sequences are fixed to the chip surface.

Product Description

Order Number: HK-EA-1

Table 1. Contents and Storage Information

MaterialCapConcentrationAmountBufferStorage
Adapter strand 1 - nf / Template-32-P-Ra DNATransparent200/250 nM10 x 100 μLTE40 [1]-20°C
cTemplate Adapter strand 2 - nf / Template-32-P-Ra DNABlack200/250 nM10 x 100 μLTE40 [1]-20°C

[1] TE40: 10 mM Tris, 40 mM NaCl, 0.05 % Tween20, 50 μM EDTA, 50 μM EGTA

For research use only. This product has a limited shelf life; please see the expiry date on the label. To avoid multiple freeze-thaw cycles, please aliquot the nanolever.

Preparation

IMPORTANT: Both Adapter strands are already pre-hybridized. Adapter strand 1 is pre-hybridized to the Template-32-P-Ra DNA strand, leaving the upper part as ssDNA. cTemplate-Adapter strand 2 is pre-hybridized to the Template-32-P-Ra DNA strand, leaving Spot 2 completely as dsDNA.

To prepare the solution for biochip functionalization, mix the Adapter strand 1 - nf / Template-32-P-Ra DNA (200/250 nM) and the cTemplate Adapter strand 2 - nf / Template-32-P-Ra DNA (200/250 nM) in the same vial at a 1:1 ratio (v/v).

Useful Order Numbers

Table 2. Order Numbers

Product NameCommentOrder No
heliX® Adapter ChipChip with 2 detection spotsADP-48-2-0
10x Passivation solutionFor passivation of chip surfaceSOL-PAS-1-5
Regeneration solutionFor regeneration of chip surfaceSOL-REG-1-5

Assay Setup in heliOS

This kit is designed for studying the enzymatic activity of nucleic acid modifying enzymes such as polymerases, reverse transcriptases, and helicases.

To set up an assay, navigate within the heliOS software: go to heliOS > create a New Assay Workflow > add Custom Assay > load Enzyme Binding and Activity. Modify the parameters as needed and run the assay. Suggested assay parameters, including flow rates, functionalization time, and LED power, are available within the heliOS assay setup.

TIP: It is strongly recommended to perform binding kinetics of the enzyme beforehand. The obtained Kd during enzyme kinetics can serve as the initial test concentration for enzyme association. This concentration is a good compromise to avoid overcrowding the surface and multiple enzyme bindings to the same template.
TIP: For initial substrate scouting, choose a broad concentration range spanning low nanomolar to high micromolar, including a blank. A minimum of 6 substrate concentrations is recommended to achieve a reliable sigmoidal fit for extracting kcat and KM.

Contact Information

For inhibition assays, analysis, or any further questions, please contact the support team at support@dynamic-biosensors.com.

Dynamic Biosensors GmbH

Perchtinger Str. 8/10
81379 Munich
Germany

Dynamic Biosensors, Inc.

300 Trade Center, Suite 1400
Woburn, MA 01801
USA

Order Information: order@dynamic-biosensors.com

Website: www.dynamic-biosensors.com

Instruments and chips are engineered and manufactured in Germany.

©2024 Dynamic Biosensors GmbH | Dynamic Biosensors, Inc. All rights reserved.

Models: HK-EA-1 v1.1 DNA Enzyme Activity Kit with Red Dye Ra, HK-EA-1 v1.1, DNA Enzyme Activity Kit with Red Dye Ra, Activity Kit with Red Dye Ra, with Red Dye Ra, Red Dye Ra, Dye Ra

File Info : application/pdf, 4 Pages, 1.81MB

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HK-EA-1

References

Asciidoctor PDF 2.3.15, based on Prawn 2.4.0 HexaPDF version 0.46.0

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